Request: increase memory + core allocation for helixer 0.3.3+galaxy1 #1115
Description
toolshed.g2.bx.psu.edu/repos/genouest/helixer/helixer/0.3.3+galaxy1
Not included in https://github.com/galaxyproject/tpv-shared-database/blob/main/tools.yml (or I missed it?)
native_specification | --nodes=1 --ntasks=1 --mem=3789 --time=36:00:00
Current at ORG
tool test 1 in https://usegalaxy.org/u/jen-galaxyproject/h/test-helixer (still executing, with launches from org + vgp included)
full sized user data run stats here, it hit the limit and pass the out of memory error
CPU usage time | 8 minutes
CPU user time | 5 minutes
CPU system time | 2 minutes
Number of processes belonging to this cgroup killed by any kind of OOM killer | 1
> Max memory usage recorded | 3.7 GB
Container ID | docker://gglyptodon/helixer-docker:helixer_v0.3.3_cuda_11.8.0-cudnn8
Container Type | singularity
> Cores Allocated | 1
Memory Allocated (MB) | 3789
Job Start Time | 2025-09-24 19:25:00 UTC (+0000)
Job End Time | 2025-09-24 19:49:18 UTC (+0000)
Job Runtime (Wall Clock) | 24 minutes
Current at EU
tool test 1 in https://usegalaxy.org/u/jen-galaxyproject/h/test-helixer
CPU usage time | 14 minutes
CPU user time | 12 minutes
CPU system time | 2 minutes
Number of processes belonging to this cgroup killed by any kind of OOM killer | 0
> Max memory usage recorded | 15.8 GB
Container ID | docker://gglyptodon/helixer-docker:helixer_v0.3.3_cuda_11.8.0-cudnn8
Container Type | singularity
> Cores Allocated | 4
Memory Allocated (MB) | 30720
Job Start Time | 2025-09-25 19:38:21
Job End Time | 2025-09-25 19:47:43
Job Runtime (Wall Clock) | 9 minutes