@@ -17,15 +17,15 @@ Terms of use
1717
1818Please note that all models provided by InnerEye-DeepLearning are intended for
1919research purposes only. You are responsible for the performance, the necessary testing,
20- and if needed any regulatory clearance for any of the models produced by this toolbox.
20+ and if needed any regulatory clearance for any of the models produced by this toolbox.
2121
2222Usage
2323-----
2424
2525The following instructions assume you have completed the preceding setup
2626steps in the `InnerEye
2727README <https://github.com/microsoft/InnerEye-DeepLearning/> `__, in
28- particular, `Setting up Azure Machine Learning <setting_up_aml.md >`__.
28+ particular, `Setting up Azure Machine Learning <../md/setting_up_aml.html >`__.
2929
3030Create an AzureML Dataset
3131~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -34,7 +34,7 @@ To evaluate pre-trained models on your own data, you will first need to register
3434an `Azure ML
3535Dataset <https://docs.microsoft.com/en-us/azure/machine-learning/v1/how-to-create-register-datasets> `__.
3636You can follow the instructions in the for `creating
37- datasets <creating_dataset.md > `__ in order to do this.
37+ datasets <../md/creating_dataset.html > `__ in order to do this.
3838
3939Downloading the models
4040~~~~~~~~~~~~~~~~~~~~~~
@@ -49,7 +49,7 @@ To evaluate the model in Azure ML, you must first `register an Azure ML
4949Model <https://docs.microsoft.com/en-us/python/api/azureml-core/azureml.core.model.model?view=azure-ml-py#remarks> `__.
5050To register the pre-trained model in your AML Workspace, unpack the
5151source code downloaded in the previous step and follow InnerEye's
52- `instructions to upload models to Azure ML <move_model.md >`__.
52+ `instructions to upload models to Azure ML <../md/move_model.html >`__.
5353
5454Run the following from a folder that contains both the ``ENVIRONMENT/ ``
5555and ``MODEL/ `` folders (these exist inside the downloaded model files):
@@ -74,7 +74,7 @@ Evaluating the model
7474You can evaluate the model either in Azure ML or locally using the
7575downloaded checkpoint files. These 2 scenarios are described in more
7676detail, along with instructions in `testing an existing
77- model <building_models.md #testing-an-existing-model> `__.
77+ model <../md/building_models.html #testing-an-existing-model> `__.
7878
7979For example, to evaluate the model on your Dataset in Azure ML, run the
8080following from within the directory ``*/MODEL/final_ensemble_model/ ``
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