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Merged
bbimber merged 3 commits into from
Jan 7, 2026
Merged

Add DB Tuning Advisor suggestions #368

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a9ff8a8
Add DB Tuning Advisor suggestions
bbimber Jan 6, 2026
c0fbc5c
Sql fix
bbimber Jan 6, 2026
4de021d
Sql fix
bbimber Jan 6, 2026
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12 changes: 12 additions & 0 deletions SequenceAnalysis/resources/schemas/dbscripts/postgresql/SequenceAnalysis-12.329-12.330.sql
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Original file line number Diff line number Diff line change
@@ -0,0 +1,12 @@
CREATE INDEX IDX_haplotypes_name_date ON sequenceanalysis.haplotypes
(
Name ASC,
datedisabled ASC
);

CREATE INDEX IDX_haplotype_sequences_name_haplotype_type ON sequenceanalysis.haplotype_sequences
(
haplotype ASC,
name ASC,
type ASC
);
39 changes: 39 additions & 0 deletions SequenceAnalysis/resources/schemas/dbscripts/sqlserver/SequenceAnalysis-12.329-12.330.sql
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Original file line number Diff line number Diff line change
@@ -0,0 +1,39 @@
CREATE NONCLUSTERED INDEX IDX_haplotypes_name_date ON sequenceanalysis.haplotypes
(
Name ASC,
datedisabled ASC
);

CREATE NONCLUSTERED INDEX IDX_haplotype_sequences_name_haplotype_type ON sequenceanalysis.haplotype_sequences
(
haplotype ASC,
name ASC,
type ASC
);

CREATE NONCLUSTERED INDEX IDX_alignment_summary_analysis_id_rowid_container_total ON sequenceanalysis.alignment_summary
(
analysis_id ASC,
rowid ASC,
container ASC
)
INCLUDE(total)

CREATE STATISTICS STAT_ref_nt_sequence_rowid_locus_container ON sequenceanalysis.ref_nt_sequences (RowId, locus, container)
WITH AUTO_DROP = OFF

CREATE STATISTICS STAT_ref_nt_sequence_locus_container ON sequenceanalysis.ref_nt_sequences (locus, container)
WITH AUTO_DROP = OFF

CREATE STATISTICS STAT_sequence_analyses_container_readset ON sequenceanalysis.sequence_analyses (Container, readset)
WITH AUTO_DROP = OFF

CREATE STATISTICS STAT_sequence_readsets_rowid_container ON sequenceanalysis.sequence_readsets (RowId, Container)
WITH AUTO_DROP = OFF

CREATE STATISTICS STAT_asj_alignmentid_container_ref_nt_id ON sequenceanalysis.alignment_summary_junction (alignment_id, container, ref_nt_id)
WITH AUTO_DROP = OFF

CREATE STATISTICS STAT_asj_alignmentid_ref_nt_id_status_alignment_id ON sequenceanalysis.alignment_summary_junction (ref_nt_id, status, alignment_id)
WITH AUTO_DROP = OFF

2 changes: 1 addition & 1 deletion SequenceAnalysis/src/org/labkey/sequenceanalysis/SequenceAnalysisModule.java
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Expand Up @@ -211,7 +211,7 @@ public String getName()
@Override
public Double getSchemaVersion()
{
return 12.329;
return 12.330;
}

@Override
Expand Down