Improve runtime for predict_library by running DeepLC and IM2Deep predictions only once

[rodvrees]

Key changes:

Changes to predict_library function:

• Added conversion of search space to PSMList and filtering of PSMs by mz in predict_library function (ms2pip/core.py).
• Moved steps to add retention time and ion mobility predictions if specified (ms2pip/core.py).

Improvements in search_space handling:

• Introduced to_psm_list method to convert search space to PSMList (ms2pip/search_space.py).
• Modified build method to ensure the number of processes is correctly set and used for parallelization (ms2pip/search_space.py).

Timing of runs on releases and this branch, on a small fasta subset of human proteome (semi-tryptic) (~240.000 PSMs, so 3 batches):
releases: 3099.83s user 1460.12s system 1312% cpu 5:47.51 total
this branch: 2405.46s user 596.67s system 1334% cpu 3:44.90 total