Migrate tree viewing from Java applet to inline phylotree.js#408

Merged

rvosa merged 25 commits intomasterfrom

copilot/update-tree-viewing-solution

Jan 27, 2026

Commits on Jan 18, 2026

Add shim for phylotree.js UMD bundle
rvosa
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Implement library wrapper for lodash and underscore
rvosa
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Add cladogram support to phylotree.js tree viewer

Copilot
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rvosa
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Fix cladogram branch length conversion regex causing NaN errors

Copilot
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rvosa
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Use phylotree.js tree traversal for cladogram handling

Copilot
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rvosa
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Fix: Use string type for node.data.attribute in makeUltrametric

Copilot
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rvosa
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Fix: Set root node attribute to "0" for phylotree.js compatibility

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rvosa
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Fix: Manually append SVG to container after render()

Copilot
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rvosa
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Simplify cladogram handling - use phylotree.js built-in support

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rvosa
committed

Commits on Jan 23, 2026

Load phylotree.js stack BEFORE Prototype.js to fix Array pollution

Copilot
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rvosa
committed

Commits on Jan 27, 2026