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Bump the python-packages group across 1 directory with 14 updates#4

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Bump the python-packages group across 1 directory with 14 updates#4
MikeLippincott merged 1 commit intomainfrom
dependabot/uv/python-packages-88c1be06ac

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@dependabot dependabot Bot commented on behalf of github Apr 16, 2026 •
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Updates the requirements on fire, pandas, poethepoet, pytest, myst-nb, pydata-sphinx-theme, sphinx, black, isort, jupyterlab, jupyterlab-code-formatter, jupytext, setuptools and setuptools-scm to permit the latest version.
Updates fire from 0.7.0 to 0.7.1

Release notes

Sourced from fire's releases.

Python Fire v0.7.1

What's Changed

  • Use Neutral theme for IPython Inspector, supporting newer IPython versions in google/python-fire#588
  • Call inspectutils.GetClassAttrsDict on component, not None in google/python-fire#606
  • Move to pyproject.toml, adding wheel support in pypi
  • Use ty in place of pytype
  • Update requirements @​dependabot[bot]

Full Changelog: google/python-fire@v0.7.0...v0.7.1

Commits

Updates pandas from 2.2.3 to 3.0.2

Release notes

Sourced from pandas's releases.

pandas 3.0.2

We are pleased to announce the release of pandas 3.0.2. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.1

We are pleased to announce the release of pandas 3.0.1. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

pandas 3.0.0

We are pleased to announce the release of pandas 3.0.0, a major release from the pandas 2.x series. This release includes various new features, bug fixes, and performance improvements, as well as possible breaking changes.

The pandas 3.0 release removed a functionality that was deprecated in previous releases. It is recommended to first upgrade to pandas 2.3 and to ensure your code is working without warnings, before upgrading to pandas 3.0.

Highlights include:

... (truncated)

Commits
  • ab90747 RLS: 3.0.2 (#64934)
  • 6f27013 Backport PR #64931 on branch 3.0.x (DOC/BLD: temporary disable upload of docs...
  • 48ddc60 Backport PR #64664 on branch 3.0.x (BUG: DataFrame.sum() crashes on empty Dat...
  • 8774488 [backport 3.0.x] PERF: fix slow python loop in validation for ArrowStringArra...
  • 33af6cc Backport PR #64133 on branch 3.0.x (BUG: str.find returns byte offset instead...
  • 4ef49d8 [backport 3.0.x] BUG: fix convert_dtypes dropping values from sliced mixed-dt...
  • 0668f34 [backport 3.0.x] BUG: Fix HDFStore.put with StringDtype columns and compressi...
  • 23f2f44 [backport 3.0.x] BUG: Suppress unnecessary RuntimeWarning in to_datetime with...
  • 83ba804 Backport PR #64886: BUG: Compute Variance of Complex Numbers Correctly (#64892)
  • bb5ca1a Backport PR #64386 on branch 3.0.x (BUG: fix sort_index AssertionError with R...
  • Additional commits viewable in compare view

Updates poethepoet from 0.34.0 to 0.44.0

Release notes

Sourced from poethepoet's releases.

0.44.0

Enhancements

Breaking changes**

  • Transitive includes are now loaded by default. Previously, if an included config file contained its own include entries, those second-order includes were silently ignored. They are now followed recursively using depth-first loading. This may cause previously ignored config files to be loaded, potentially introducing new tasks or environment variables. To preserve the old behavior for a specific include, set recursive = false on that include entry. See the include guide for details.

Full Changelog: nat-n/poethepoet@v0.43.0...v0.44.0

0.43.0

Enhancements

Breaking changes

This release includes a refactor of how task variables are managed, improving boolean arg semantics and introducing private variables. These changes may affect a small number of existing configurations:

  • Boolean args now produce unset env vars when false. Previously false mapped to the string "False"; now the env var is removed entirely. This gives consistent falsy behavior across shells and parameter expansion operators (:-, :+). Tasks checking for the literal string "False" or using os.environ["flag"] will need updating.

  • Private env vars are filtered from subprocesses. Variables starting with _ and containing no uppercase characters (e.g. _secret) are now treated as private — available for config-time interpolation but excluded from the task subprocess environment. This is unlikely to affect existing configurations, but any task that relies on a subprocess reading a _lowercase env var will need to rename it.

  • Private arg option names strip leading underscores. An arg named _flag with no explicit options now generates --flag instead of --_flag. A new validation rejects duplicate CLI options across args.

See the migration guide for details and recommended fixes.

New Contributors

Full Changelog: nat-n/poethepoet@v0.42.1...v0.43.0

0.42.1

Enhancements

Completion script fixes

[!IMPORTANT] You must follow the instructions to (re)install the completion script for your preferred shell environment to benefit from the completion script fixes

New Contributors

Full Changelog: nat-n/poethepoet@v0.42.0...v0.42.1

... (truncated)

Commits
  • 67a623d Bump version to 0.44.0
  • 472f390 feat!: support recursive includes #317 (#372)
  • 3168956 chore: optimize tests to run 17pc faster (#371)
  • 6a25fba chore: bump version to 0.43.0
  • 83091a5 feat!: treat false boolean args as unset env vars and add private vars (#359)
  • 456094a feat: Add task groups for grouping tasks under a heading in help output (#354)
  • 4979272 Bump version to 0.42.1
  • 1f40807 fix: completion script edge case handling (#366)
  • c67a858 feat(uv): add exact option for uv executor (#365)
  • 8f4d5c4 fix: isolate zsh completion task options from global options (#364)
  • Additional commits viewable in compare view

Updates pytest from 8.3.5 to 9.0.3

Release notes

Sourced from pytest's releases.

9.0.3

pytest 9.0.3 (2026-04-07)

Bug fixes

  • #12444: Fixed pytest.approx which now correctly takes into account ~collections.abc.Mapping keys order to compare them.

  • #13634: Blocking a conftest.py file using the -p no: option is now explicitly disallowed.

    Previously this resulted in an internal assertion failure during plugin loading.

    Pytest now raises a clear UsageError explaining that conftest files are not plugins and cannot be disabled via -p.

  • #13734: Fixed crash when a test raises an exceptiongroup with __tracebackhide__ = True.

  • #14195: Fixed an issue where non-string messages passed to unittest.TestCase.subTest() were not printed.

  • #14343: Fixed use of insecure temporary directory (CVE-2025-71176).

Improved documentation

  • #13388: Clarified documentation for -p vs PYTEST_PLUGINS plugin loading and fixed an incorrect -p example.
  • #13731: Clarified that capture fixtures (e.g. capsys and capfd) take precedence over the -s / --capture=no command-line options in Accessing captured output from a test function <accessing-captured-output>.
  • #14088: Clarified that the default pytest_collection hook sets session.items before it calls pytest_collection_finish, not after.
  • #14255: TOML integer log levels must be quoted: Updating reference documentation.

Contributor-facing changes

  • #12689: The test reports are now published to Codecov from GitHub Actions. The test statistics is visible on the web interface.

    -- by aleguy02

9.0.2

pytest 9.0.2 (2025-12-06)

Bug fixes

  • #13896: The terminal progress feature added in pytest 9.0.0 has been disabled by default, except on Windows, due to compatibility issues with some terminal emulators.

    You may enable it again by passing -p terminalprogress. We may enable it by default again once compatibility improves in the future.

    Additionally, when the environment variable TERM is dumb, the escape codes are no longer emitted, even if the plugin is enabled.

  • #13904: Fixed the TOML type of the tmp_path_retention_count settings in the API reference from number to string.

  • #13946: The private config.inicfg attribute was changed in a breaking manner in pytest 9.0.0. Due to its usage in the ecosystem, it is now restored to working order using a compatibility shim. It will be deprecated in pytest 9.1 and removed in pytest 10.

... (truncated)

Commits

Updates myst-nb from 1.2.0 to 1.4.0

Release notes

Sourced from myst-nb's releases.

v1.4.0

What's Changed

New Contributors

Full Changelog: executablebooks/MyST-NB@v1.3.0...v1.4.0

v1.3.0

What's Changed

New Contributors

Full Changelog: executablebooks/MyST-NB@v1.2.0...v1.3.0

Changelog

Sourced from myst-nb's changelog.

v1.4.0 - 2026-03-02

(full changelog)

What's Changed

New Contributors

v1.3.0 - 2025-07-13

(full changelog)

What's Changed

Enhancements made

Maintenance and upkeep improvements

New Contributors

Commits

Updates pydata-sphinx-theme from 0.16.1 to 0.17.0

Release notes

Sourced from pydata-sphinx-theme's releases.

v0.17.0

What's Changed

... (truncated)

Commits

Updates sphinx from 8.2.3 to 9.1.0

Release notes

Sourced from sphinx's releases.

Sphinx 9.1.0

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Dependencies

  • #14153: Drop Python 3.11 support.
  • #12555: Drop Docutils 0.20 support. Patch by Adam Turner

Features added

  • Add add_static_dir() for copying static assets from extensions to the build output. Patch by Jared Dillard

Bugs fixed

  • #14189: autodoc: Fix duplicate :no-index-entry: for modules. Patch by Adam Turner
  • #13713: Fix compatibility with MyST-Parser. Patch by Adam Turner
  • Fix tests for Python 3.15. Patch by Adam Turner
  • #14089: autodoc: Fix default option parsing. Patch by Adam Turner
  • Remove incorrect static typing assertions. Patch by Adam Turner
  • #14050: LaTeXTranslator fails to build documents using the "acronym" standard role. Patch by Günter Milde
  • LaTeX: Fix rendering for grid filled merged vertical cell. Patch by Tim Nordell
  • #14228: LaTeX: Fix overrun footer for cases of merged vertical table cells. Patch by Tim Nordell
  • #14207: Fix creating HTMLThemeFactory objects in third-party extensions. Patch by Adam Turner
  • #3099: LaTeX: PDF build crashes if a code-block contains more than circa 1350 codelines (about 27 a4-sized pages at default pointsize). Patch by Jean-François B.
  • #14064: LaTeX: TABs ending up in sphinxVerbatim fail to obey tab stops. Patch by Jean-François B.
  • #14089: autodoc: Improve support for non-weakreferencable objects. Patch by Adam Turner
  • LaTeX: Fix accidental removal at 3.5.0 (#8854) of the documentation of literalblockcappos key of sphinxsetup. Patch by Jean-François B.

... (truncated)

Changelog

Sourced from sphinx's changelog.

Release 9.1.0 (released Dec 31, 2025)

Dependencies

  • #14153: Drop Python 3.11 support.
  • #12555: Drop Docutils 0.20 support. Patch by Adam Turner

Features added

  • Add :meth:~sphinx.application.Sphinx.add_static_dir for copying static assets from extensions to the build output. Patch by Jared Dillard

Bugs fixed

  • #14189: autodoc: Fix duplicate :no-index-entry: for modules. Patch by Adam Turner
  • #13713: Fix compatibility with MyST-Parser. Patch by Adam Turner
  • Fix tests for Python 3.15. Patch by Adam Turner
  • #14089: autodoc: Fix default option parsing. Patch by Adam Turner
  • Remove incorrect static typing assertions. Patch by Adam Turner
  • #14050: LaTeXTranslator fails to build documents using the "acronym" standard role. Patch by Günter Milde
  • LaTeX: Fix rendering for grid filled merged vertical cell. Patch by Tim Nordell
  • #14228: LaTeX: Fix overrun footer for cases of merged vertical table cells. Patch by Tim Nordell
  • #14207: Fix creating HTMLThemeFactory objects in third-party extensions. Patch by Adam Turner
  • #3099: LaTeX: PDF build crashes if a code-block contains more than circa 1350 codelines (about 27 a4-sized pages at default pointsize). Patch by Jean-François B.
  • #14064: LaTeX: TABs ending up in sphinxVerbatim fail to obey tab stops. Patch by Jean-François B.
  • #14089: autodoc: Improve support for non-weakreferencable objects. Patch by Adam Turner
  • LaTeX: Fix accidental removal at 3.5.0 (#8854) of the documentation of literalblockcappos key of :ref:'sphinxsetup' <latexsphinxsetup>. Patch by Jean-François B.
Commits
  • cc7c6f4 Bump to 9.1.0 final
  • b127b94 Add app.add_static_dir() for copying extension static files (#14219)
  • 20f1c46 LaTeX: Inhibit breaks for rows with merged vertical cells (#14227)
  • 3c85411 Polish CHANGES.rst (#14225)
  • 9ee5446 LaTeX: restore 1.7 documentation of literalblockcappos (#14224)
  • d75d602 LaTeX: improve (again...) some code comments in time for 9.1.0 (#14222)
  • 8dca61d Improve some LaTeX code comments (#14220)
  • 8ab9600 Bump to 9.1.0 candidate 2
  • d59b237 autodoc: Improve support for non-weakreferencable objects
  • 964424b Use the correct reference for using existing extensions (#14157)
  • Additional commits viewable in compare view

Updates black from 25.1.0 to 26.3.1

Release notes

Sourced from black's releases.

26.3.1

Stable style

  • Prevent Jupyter notebook magic masking collisions from corrupting cells by using exact-length placeholders for short magics and aborting if a placeholder can no longer be unmasked safely (#5038)

Configuration

  • Always hash cache filename components derived from --python-cell-magics so custom magic names cannot affect cache paths (#5038)

Blackd

  • Disable browser-originated requests by default, add configurable origin allowlisting and request body limits, and bound executor submissions to improve backpressure (#5039)

26.3.0

Stable style

  • Don't double-decode input, causing non-UTF-8 files to be corrupted (#4964)
  • Fix crash on standalone comment in lambda default arguments (#4993)
  • Preserve parentheses when # type: ignore comments would be merged with other comments on the same line, preventing AST equivalence failures (

@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code labels Apr 16, 2026
@MikeLippincott MikeLippincott requested a review from Copilot April 16, 2026 22:39
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Pull request overview

This Dependabot PR bumps minimum versions for several Python packaging, runtime, and development/documentation dependencies in pyproject.toml, keeping the project’s dependency floor current.

Changes:

  • Update build-system requirements (setuptools, setuptools-scm).
  • Raise minimum runtime dependencies (fire, pandas).
  • Raise minimum dev/docs/notebook toolchain dependencies (poethepoet, pytest, myst-nb, pydata-sphinx-theme, sphinx, black, isort, jupyterlab, jupyterlab-code-formatter, jupytext).

💡 Add Copilot custom instructions for smarter, more guided reviews. Learn how to get started.

@dependabot
Bump the python-packages group with 14 updates
e4ca5a6 
---
updated-dependencies:
- dependency-name: fire
  dependency-version: 0.7.1
  dependency-type: direct:production
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: pandas
  dependency-version: 3.0.2
  dependency-type: direct:production
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: poethepoet
  dependency-version: 0.44.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: pytest
  dependency-version: 9.0.3
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: myst-nb
  dependency-version: 1.4.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: pydata-sphinx-theme
  dependency-version: 0.17.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: sphinx
  dependency-version: 9.1.0
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: black
  dependency-version: 26.3.1
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: isort
  dependency-version: 8.0.1
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: jupyterlab
  dependency-version: 4.5.6
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: jupyterlab-code-formatter
  dependency-version: 3.0.3
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python-packages
- dependency-name: jupytext
  dependency-version: 1.19.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python-packages
- dependency-name: setuptools
  dependency-version: 82.0.1
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: python-packages
- dependency-name: setuptools-scm
  dependency-version: 10.0.5
  dependency-type: direct:development
  dependency-group: python-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot changed the title Bump the python-packages group with 14 updates Bump the python-packages group across 1 directory with 14 updates Apr 16, 2026
@dependabot dependabot Bot force-pushed the dependabot/uv/python-packages-88c1be06ac branch from 2de7a9b to e4ca5a6 Compare April 16, 2026 22:59
@MikeLippincott MikeLippincott merged commit e4ca5a6 into main Apr 16, 2026
26 of 28 checks passed
@dependabot dependabot Bot deleted the dependabot/uv/python-packages-88c1be06ac branch April 16, 2026 23:23
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