adding ioos models catalog notebook

jupyterbook/content/Code Gallery/data_access_notebooks/2020-02-28-IOOS-models.ipynb

@@ -0,0 +1,209 @@
+{
+ "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "# IOOS models: how to find model data in the catalog\n",
+    "\n",
+    "This is the third post on the series “IOOS Ocean Models IOOS.”"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "metadata": {
+    "code_folding": []
+   },
+   "outputs": [],
+   "source": [
+    "models = {\n",
+    "    \"DOPPIO\": {\n",
+    "        \"RA\": \"MARACOOS\",\n",
+    "        \"url\": \"http://tds.marine.rutgers.edu/thredds/dodsC/roms/doppio/2017_da/avg/Averages_Best\",\n",
+    "        \"var\": {\"standard_name\": \"sea_water_potential_temperature\"},\n",
+    "    },\n",
+    "    \"NYHOPS\": {\n",
+    "        \"RA\": \"MARACOOS\",\n",
+    "        \"url\": \"http://colossus.dl.stevens-tech.edu:8080/thredds/dodsC/latest/Complete_gcmplt.nc\",\n",
+    "        \"var\": {\"standard_name\": \"sea_water_temperature\"},\n",
+    "    },\n",
+    "    \"NECOFS-GOM3\": {\n",
+    "        \"RA\": \"NERACOOS\",\n",
+    "        \"url\": \"http://www.smast.umassd.edu:8080/thredds/dodsC/FVCOM/NECOFS/Forecasts/NECOFS_GOM3_FORECAST.nc\",\n",
+    "        \"var\": {\"standard_name\": \"sea_water_potential_temperature\"},\n",
+    "    },\n",
+    "    \"NECOFS-MASSBAY\": {\n",
+    "        \"RA\": \"NERACOOS\",\n",
+    "        \"url\": \"http://www.smast.umassd.edu:8080/thredds/dodsC/FVCOM/NECOFS/Forecasts/NECOFS_FVCOM_OCEAN_MASSBAY_FORECAST.nc\",\n",
+    "        \"var\": {\"standard_name\": \"sea_water_potential_temperature\"},\n",
+    "    },\n",
+    "    \"CNAPS\": {\n",
+    "        \"RA\": \"SECOORA\",\n",
+    "        \"url\": \"http://thredds.secoora.org/thredds/dodsC/SECOORA_NCSU_CNAPS.nc\",\n",
+    "        \"var\": {\"standard_name\": \"sea_water_potential_temperature\"},\n",
+    "    },\n",
+    "    \"CMOP-SELFE\": {\n",
+    "        \"RA\": \"NANOOS\",\n",
+    "        \"url\": \"http://amb6400b.stccmop.org:8080/thredds/dodsC/model_data/forecast\",\n",
+    "        \"var\": {\"standard_name\": \"average_sea_water_temperature\"},\n",
+    "    },\n",
+    "    \"OSU-ROMS\": {\n",
+    "        \"RA\": \"NANOOS\",\n",
+    "        \"url\": \"http://ona.coas.oregonstate.edu:8080/thredds/dodsC/NANOOS/OCOS\",\n",
+    "        \"var\": {\"standard_name\": \"sea_water_potential_temperature\"},\n",
+    "    },\n",
+    "    \"Hawaii-ROMS\": {\n",
+    "        \"RA\": \"PacIOOS\",\n",
+    "        \"url\": \"http://oos.soest.hawaii.edu/thredds/dodsC/hioos/roms_forec/hiig/ROMS_Hawaii_Regional_Ocean_Model_best.ncd\",\n",
+    "        \"var\": {\"standard_name\": \"sea_water_potential_temperature\"},\n",
+    "    },\n",
+    "    \"WCOFS\": {\n",
+    "        \"url\": \"http://opendap.co-ops.nos.noaa.gov/thredds/dodsC/WCOFS/fmrc/Aggregated_7_day_WCOFS_Fields_Forecast_best.ncd\",\n",
+    "        \"var\": {\"standard_name\": \"sea_water_temperature\"},\n",
+    "    },\n",
+    "    \"WestCoastUCSC\": {\n",
+    "        \"url\": \"http://oceanmodeling.pmc.ucsc.edu:8080/thredds/dodsC/ccsra_2016a_phys_agg_zlevs/fmrc/CCSRA_2016a_Phys_ROMS_z-level_(depth)_Aggregation_best.ncd\",\n",
+    "        \"var\": {\"long_name\": \"potential temperature\"},\n",
+    "    },\n",
+    "}"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from owslib import fes\n",
+    "\n",
+    "\n",
+    "cf_names = set([list(model[\"var\"].values())[0] for model in models.values()])\n",
+    "\n",
+    "kw = dict(\n",
+    "    wildCard=\"*\",\n",
+    "    escapeChar=\"\\\\\",\n",
+    "    singleChar=\"?\",\n",
+    "    propertyname=\"apiso:Subject\",\n",
+    ")\n",
+    "\n",
+    "or_filt = fes.Or(\n",
+    "    [\n",
+    "        fes.PropertyIsLike(literal=(\"*{val}*\"), **kw)\n",
+    "        for val in cf_names\n",
+    "    ]\n",
+    ")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 3,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from datetime import datetime\n",
+    "from ioos_tools.ioos import fes_date_filter\n",
+    "\n",
+    "\n",
+    "start = datetime(2020, 1, 1)\n",
+    "stop = datetime(2020, 1, 8)\n",
+    "\n",
+    "begin, end = fes_date_filter(start, stop)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 4,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "bbox = [-145, 20, -45, 50]\n",
+    "crs = \"urn:ogc:def:crs:OGC:1.3:CRS84\"\n",
+    "\n",
+    "\n",
+    "bbox_crs = fes.BBox(bbox, crs=crs)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "filter_list = [\n",
+    "    fes.And(\n",
+    "        [\n",
+    "            bbox_crs,\n",
+    "            begin,\n",
+    "            end,\n",
+    "            or_filt,\n",
+    "        ]\n",
+    "    )\n",
+    "]"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 6,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "from owslib.csw import CatalogueServiceWeb\n",
+    "from ioos_tools.ioos import get_csw_records\n",
+    "\n",
+    "\n",
+    "endpoint = \"https://data.ioos.us/csw\"\n",
+    "csw = CatalogueServiceWeb(endpoint, timeout=120)\n",
+    "csw = get_csw_records(csw, filter_list, esn=\"full\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "OrderedDict()\n"
+     ]
+    }
+   ],
+   "source": [
+    "print(csw.records)"
+   ]
+  }
+ ],
+ "metadata": {
+  "_draft": {
+   "nbviewer_url": "https://gist.github.com/082ff31d26e85767e2bdcb622fb753b4"
+  },
+  "gist": {
+   "data": {
+    "description": "2018-04-21-horizontal-slices",
+    "public": true
+   },
+   "id": "082ff31d26e85767e2bdcb622fb753b4"
+  },
+  "kernelspec": {
+   "display_name": "Python 3",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.1"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}