Version 0.0.7

Change Summary

• New module scico.trace for tracing function/method calls.
• New generic functional functional.ComposedFunctional representing a functional composed with an orthogonal linear operator.
• New optimizer methods save_state and load_state supporting algorithm state checkpointing.
• New classes for creating a volume from an image by symmetry, and for cone beam X-ray transform of a cylindrically symmetric object in module linop.xray.symcone.
• New utility functions for CT reconstruction preprocessing added in module linop.xray.
• Moved linop.abel module to linop.xray.abel.
• Make orbax-checkpoint dependency optional due to absence of recent conda-forge packages.
• Support jaxlib and jax versions 0.5.0 to 0.8.1.
• Support flax versions 0.8.0 to 0.12.0

Changes in Detail

• Set up for version 0.0.7 development by @bwohlberg in #566
• Resolve #564 by @bwohlberg in #567
• Restore running of astra tests by @bwohlberg in #568
• Remove temporary changes from pytest runs in CI by @bwohlberg in #570
• Add call tracing module by @bwohlberg in #569
• Bump jax and flax version upper bounds by @bwohlberg in #572
• Add a utility function for rotating CT volumes by @bwohlberg in #574
• Docs fix by @bwohlberg in #575
• Add ComposedFunctional class by @bwohlberg in #577
• Fix bug in trace module by @bwohlberg in #581
• Add support for optimizer checkpointing by @bwohlberg in #579
• Improve X-ray docs by @Michael-T-McCann in #578
• Resolve failure with jax 0.6.0 by @bwohlberg in #584
• Clean up example scripts by @bwohlberg in #586
• Bump maximum jax version by @bwohlberg in #587
• Bump maximum jax and flax versions by @bwohlberg in #589
• Changes to BlockArray and gradient operators by @bwohlberg in #591
• Improve docs and rearrange functions by @bwohlberg in #590
• Bump jaxlib, jax, and flax version upper bounds by @bwohlberg in #593
• Function jax.scipy.special.sph_harm deprecated by @bwohlberg in #594
• Fix for possibly missing scico.scipy.special.sph_harm by @bwohlberg in #595
• Add cone-beam X-ray transform for symmetric volumes by @bwohlberg in #596
• Bump jax and flax max versions by @bwohlberg in #599
• Remove BA and DA abbreviations by @Michael-T-McCann in #597
• Resolve #583 by @bwohlberg in #598
• Bump jax and flax versions. by @bwohlberg in #600
• Cristina/580 by @crstngc in #601
• Add some utility functions for CT reconstruction. by @bwohlberg in #602
• Make orbax-checkpoint optional by @bwohlberg in #603
• Update for recent ray API changes by @bwohlberg in #604
• Resolve deprecation warning by @bwohlberg in #605
• Add note on recent changes to change log by @bwohlberg in #606
• Update setup config by @bwohlberg in #607
• Various dependency compatibility fixes by @bwohlberg in #608
• Update jaxlib/jax version by @bwohlberg in #610
• Bump jax/jaxlib version by @bwohlberg in #611
• Suppress ray warning by @bwohlberg in #612
• Flax/orbax usage updates by @crstngc in #613
• Resolve or suppress test warnings by @bwohlberg in #614
• Fix docs build problems and rebuild some notebooks by @bwohlberg in #615
• Changes for 0.0.7 release by @bwohlberg in #616

Full Changelog: v0.0.6...v0.0.7