chore: align with current standards and upgrade dependencies

.gitignore

@@ -119,5 +119,7 @@ dist
 
 .DS_Store
 
+.claude
+
 lib
 lib-esm

.npmrc

@@ -1 +1,2 @@
 package-lock=false
+ignore-scripts=true

package.json

@@ -17,14 +17,14 @@
   ],
   "scripts": {
     "check-types": "tsc --noEmit",
-    "clean": "rimraf lib",
+    "clean": "rimraf coverage lib",
     "createSchema": "typescript-json-schema --refs false ./tsconfig.json FilterXYType > FilterXYSchema.json",
-    "eslint": "eslint . --cache",
-    "eslint-fix": "node --run eslint -- --fix",
+    "eslint": "eslint .",
+    "eslint-fix": "eslint . --fix",
     "prepack": "npm run createSchema && npm run tsc",
     "prettier": "prettier --check .",
     "prettier-write": "prettier --write .",
-    "test": "npm run test-only && npm run eslint && npm run prettier && npm run check-types",
+    "test": "npm run test-only && npm run check-types && npm run eslint && npm run prettier",
     "test-only": "vitest run --coverage",
     "tsc": "npm run clean && npm run tsc-build",
     "tsc-build": "tsc --project tsconfig.build.json"
@@ -37,23 +37,24 @@
     "url": "https://github.com/mljs/signal-processing/issues"
   },
   "homepage": "https://github.com/mljs/signal-processing#readme",
+  "dependencies": {
+    "baselines": "^1.1.10",
+    "cheminfo-types": "^1.15.0",
+    "ml-gsd": "^14.2.0",
+    "ml-savitzky-golay-generalized": "^5.0.0",
+    "ml-spectra-processing": "^14.29.1"
+  },
   "devDependencies": {
-    "@vitest/coverage-v8": "^4.1.5",
+    "@types/node": "^25.6.0",
+    "@vitest/coverage-istanbul": "^4.1.9",
     "@zakodium/tsconfig": "^1.0.5",
     "eslint": "^9.39.2",
-    "eslint-config-cheminfo-typescript": "^22.0.0",
+    "eslint-config-cheminfo-typescript": "^22.1.0",
     "jest-matcher-deep-close-to": "^3.0.2",
-    "prettier": "^3.8.3",
+    "prettier": "^3.8.4",
     "rimraf": "^6.1.3",
     "typescript": "^6.0.3",
-    "typescript-json-schema": "^0.67.1",
-    "vitest": "^4.1.5"
-  },
-  "dependencies": {
-    "baselines": "^1.1.10",
-    "cheminfo-types": "^1.15.0",
-    "ml-gsd": "^13.1.1",
-    "ml-savitzky-golay-generalized": "^5.0.0",
-    "ml-spectra-processing": "^14.28.1"
+    "typescript-json-schema": "^0.67.4",
+    "vitest": "^4.1.9"
   }
 }

src/filters/x/ensureGrowing.ts

@@ -7,7 +7,7 @@ export interface EnsureGrowingFilter {
 
 /**
  * Ensure X values are strictly monotonic increasing
- * http://www-groups.mcs.st-andrews.ac.uk/~john/analysis/Lectures/L8.html
+ * https://www-groups.mcs.st-andrews.ac.uk/~john/analysis/Lectures/L8.html
  * @param data
  */
 export function ensureGrowing(data: DataXY<Float64Array>): {

src/filters/x/reverseIfNeeded.ts

@@ -7,7 +7,7 @@ export interface ReverseIfNeededFilter {
 
 /**
  * Ensure X values are strictly monotonic increasing
- * http://www-groups.mcs.st-andrews.ac.uk/~john/analysis/Lectures/L8.html
+ * https://www-groups.mcs.st-andrews.ac.uk/~john/analysis/Lectures/L8.html
  * @param data
  */
 export function reverseIfNeeded(data: DataXY<Float64Array>): {

tsconfig.json

@@ -1,8 +1,9 @@
 {
   "extends": "@zakodium/tsconfig",
   "compilerOptions": {
+    "noUncheckedIndexedAccess": false,
     "outDir": "lib",
-    "noUncheckedIndexedAccess": false
+    "types": ["node"]
   },
   "include": ["src", "vite*.ts"]
 }

vitest.config.ts

@@ -4,7 +4,11 @@ export default defineConfig({
   test: {
     coverage: {
       include: ['src/**'],
+      provider: 'istanbul',
     },
     setupFiles: ['vitest.setup.ts'],
+    snapshotFormat: {
+      maxOutputLength: Number.MAX_SAFE_INTEGER,
+    },
   },
 });