Repositories list

• scarecrow

  Public
  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

• morganresearchlab.github.io

  Public
  Morgan Lab web page

  TypeScript

  •0•0•0•0•Updated Oct 20, 2025Oct 20, 2025

• scarecrow_paper

  Public
  Code used for analyses in scarecrow paper

  MIT License

  •0•0•0•0•Updated Oct 10, 2025Oct 10, 2025

• SomaticMutationPipeline

  Public
  A snakemake pipeline for calling somatic mutations from single-cell transcriptomes

  Python

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 18, 2025Sep 18, 2025

• ProgenitorTEC2024

  Public
  Notebooks and analysis code for the Progenitor TEC manuscript

  HTML

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jul 29, 2025Jul 29, 2025

• wiki

  Public
  Morgan Lab wiki page

  HTML

  •0•0•0•0•Updated May 30, 2025May 30, 2025

• .github

  Public
  GNU General Public License v3.0

  •0•0•0•0•Updated May 20, 2025May 20, 2025

• benccchmarker

  Public
  Python framework to benchmark different cell-to-cell communication algorithms

  pythonbioinformaticscomputational-biology+ 2ccccell-to-cell-communication

  Python

  •

  MIT License

  •0•0•0•0•Updated Mar 25, 2025Mar 25, 2025

• BT5511_notebooks

  Public
  A collection of jupyter notebooks from BT5511 practicals

  Jupyter Notebook

  •0•0•0•0•Updated Mar 18, 2025Mar 18, 2025

• AmerJ_SomaticMutations

  Public
  Notebooks from Amer's summer project on somatic mutations

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Sep 27, 2024Sep 27, 2024

• Milo2.0Analysis_2023

  Public
  Scripts and notebooks to accompany the Milo2.0 manuscript

  R

  •

  GNU General Public License v3.0

  •1•3•0•0•Updated Apr 23, 2024Apr 23, 2024

• KerryMasters2023

  Public
  Scripts and analyses for Kerry's Masters project analysis

  R

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Aug 3, 2023Aug 3, 2023