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Make scripts and data available - #1

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adw96 wants to merge 3 commits into
mainfrom
data-scripts-bioinformatics
Open

Make scripts and data available#1
adw96 wants to merge 3 commits into
mainfrom
data-scripts-bioinformatics

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@adw96

@adw96 adw96 commented Aug 21, 2026

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Here I'm adding everything that's needed to obtain the trees analyzed in v2 of the preprint. I will work on a README to help the user orient.

Not ready for review yet.

@adw96

adw96 commented Aug 21, 2026

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I still need to figure out/remember how I made pipeline/input/gene_alignments/. TODO @adw96

@adw96

adw96 commented Aug 24, 2026

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They came from Zhang et al's supplementary data. I've now given the file path in the README.

@MariaAVC Could you please merge this PR when you are comfortable? It's ready for review. You are welcome to try to rerun everything to confirm it's all there, but I don't think this is strictly necessary.

@adw96
adw96 requested a review from MariaAVC August 24, 2026 20:52
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