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@sys-bio

UW Sauro Lab

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  1. tellurium tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    Python 137 41

  2. roadrunner roadrunner Public

    Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    C++ 57 29

Repositories

Showing 10 of 119 repositories
  • SimpleSEDML Public

    A simple API for using the Simulation Experiment Description Markup Language (SED-ML)

    sys-bio/SimpleSEDML’s past year of commit activity
    Jupyter Notebook 0 MIT 1 1 1 Updated Apr 11, 2026
  • AAAIM Public
    sys-bio/AAAIM’s past year of commit activity
    Jupyter Notebook 2 MIT 2 0 0 Updated Apr 10, 2026
  • libOmexMeta Public

    libOmexMeta is a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.

    sys-bio/libOmexMeta’s past year of commit activity
    C 8 Apache-2.0 6 34 1 Updated Apr 10, 2026
  • tellurium Public

    Python Environment for Modeling and Simulating Biological Systems

    sys-bio/tellurium’s past year of commit activity
    Python 137 Apache-2.0 41 129 4 Updated Apr 10, 2026
  • WebIridium Public

    Web-based simulation and analysis of biological models

    sys-bio/WebIridium’s past year of commit activity
    TypeScript 4 2 14 1 Updated Apr 7, 2026
  • antimony Public
    sys-bio/antimony’s past year of commit activity
    C++ 20 BSD-3-Clause 4 21 0 Updated Apr 4, 2026
  • libroadrunner-deps Public

    Dependencies for libroadrunner

    sys-bio/libroadrunner-deps’s past year of commit activity
    CMake 3 5 0 0 Updated Apr 4, 2026
  • SBMLNetwork Public Forked from adelhpour/SBMLNetwork

    SBMLNetwork is a library designed to enable software developers and systems biologists to interact with the graphical representation of SBML (Systems Biology Markup Language) models.

    sys-bio/SBMLNetwork’s past year of commit activity
    C++ 4 MIT 1 10 2 Updated Apr 4, 2026
  • roadrunner Public Forked from AndySomogyi/sbmlsolver

    libRoadRunner: A high-performance SBML simulator

    sys-bio/roadrunner’s past year of commit activity
    C++ 57 37 73 (1 issue needs help) 2 Updated Mar 26, 2026
  • SplineGenerator Public

    Generates a Antimony Spline from x/y data

    sys-bio/SplineGenerator’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 22, 2026
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