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Update Parabricks modules to version 4.7.1#12404

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gburnett-nvidia merged 1 commit into
nf-core:masterfrom
gburnett-nvidia:parabricks_4_7_1_update
Jul 23, 2026
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Update Parabricks modules to version 4.7.1#12404
gburnett-nvidia merged 1 commit into
nf-core:masterfrom
gburnett-nvidia:parabricks_4_7_1_update

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This PR bumps the version of the Parabricks modules from 4.7 to 4.7.1. The full release notes show all the changes in this version, but pasted below are the highlights:

  • Performance improvements in deepvariant with small model enabled. The small model is now enabled by default, similar to Google DeepVariant.
  • Added Roche SBX mode to pangenome_aware_deepvariant with the new --sbx flag for GPU-accelerated variant calling on Roche SBX-D and SBX-Fast sequencing data.
  • Performance improvements for fq2bam and fq2bam_meth. Added optional support for processing reads up to 1024 bp on GPU.
  • Performance improvements for single-end alignment with giraffe.
  • Added support for reading CRAM v3.1 files.
  • Updated version of minimap2 to v2.31.
  • GPU-accelerated chaining in minimap2 with the new --chaining-on-gpu flag.

@gburnett-nvidia gburnett-nvidia changed the title feat: bump version to Parabricks 4.7.1 and update snapshots feat: bump version to Parabricks 4.7.1 Jul 22, 2026
@gburnett-nvidia gburnett-nvidia changed the title feat: bump version to Parabricks 4.7.1 Bump version to Parabricks 4.7.1 Jul 22, 2026
@gburnett-nvidia gburnett-nvidia changed the title Bump version to Parabricks 4.7.1 Update Parabricks modules to version 4.7.1 Jul 22, 2026
@gburnett-nvidia
gburnett-nvidia requested a review from famosab July 22, 2026 21:57
@gburnett-nvidia
gburnett-nvidia added this pull request to the merge queue Jul 23, 2026
Merged via the queue into nf-core:master with commit 3e0ec64 Jul 23, 2026
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@gburnett-nvidia
gburnett-nvidia deleted the parabricks_4_7_1_update branch July 23, 2026 15:21
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2 participants