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Pull requests: nf-core/modules

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190 Open 8,836 Closed
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Pull requests list

New module: ANGSD/SOAPSNPCALIBRATION
#12406 opened Jul 22, 2026 by ASendellPrice Contributor Loading…
12 of 14 tasks
1
@ASendellPrice
1
Update Parabricks modules to version 4.7.1
#12404 opened Jul 22, 2026 by gburnett-nvidia Contributor Loading…
re-enable prek not just skipping over all files
#12403 opened Jul 22, 2026 by mashehu Contributor Loading…
bump default CPU and memory to use the full runner resources
#12402 opened Jul 22, 2026 by mashehu Contributor Loading…
Add new component: gridss/call
#12401 opened Jul 22, 2026 by imsarath Contributor • Draft
17 tasks
1
Add module: sylph/query
#12399 opened Jul 22, 2026 by nghiaagent Loading…
13 of 17 tasks
1
6
gtffilter: add support for non-Ensembl GTF files
#12393 opened Jul 21, 2026 by kanishkanandhkumar Loading…
2
Propr topics size/l
#12387 opened Jul 20, 2026 by SPPearce Contributor • Draft
bismark/align: intra-instance -p threading (replace --multicore fork model for Bowtie 2 + HISAT2)
#12385 opened Jul 19, 2026 by FelixKrueger Contributor Loading…
3 tasks
9
Add new component: gridss/assemble
#12382 opened Jul 17, 2026 by imsarath Contributor • Draft
17 tasks
1
New module: angsd/dosaf
#12359 opened Jul 14, 2026 by ASendellPrice Contributor Loading…
12 of 14 tasks
1
@ASendellPrice
19
Fix strict syntax in utils_* subworkflows
#12329 opened Jul 9, 2026 by itrujnara Contributor Loading…
2 of 4 tasks
6
feat (closes #7246): add new component: leafcutter/differentialsplicing
#12271 opened Jul 7, 2026 by JTL-lab Contributor Loading…
14 of 17 tasks
1
6
Update to topic metaspace/*
#12247 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
2
Update to topic metamaps/*
#12246 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
6
new module: fastaguard awaiting-changes will be closed after 30 days
#12239 opened Jul 3, 2026 by ehsanestaji Contributor Loading…
14 of 15 tasks
17
Add new subworkflow: ubam_align_minimap2 Ready for Review
#12238 opened Jul 3, 2026 by manascripts Member Loading…
7 of 17 tasks
Update deacon module awaiting-changes will be closed after 30 days draft
#12236 opened Jul 3, 2026 by sofstam Contributor Loading…
17 tasks
Add subworkflow: fastq_align_minimap2 Ready for Review size/m
#12235 opened Jul 3, 2026 by manascripts Member Loading…
8 of 17 tasks
gstama_polyacleanup: Fixed regression - Fixing output glob Ready for Review
#12228 opened Jul 2, 2026 by sguizard Contributor Loading…
4
Add ciri2 module draft
#12224 opened Jul 1, 2026 by razmia02 Loading…
10 of 17 tasks
1
Added nf-core module presto/pairseq awaiting-changes will be closed after 30 days
#12222 opened Jul 1, 2026 by Vivian0105 Contributor Loading…
17 tasks
2
Seqkit replace - fix #9647 and #9646 awaiting-changes will be closed after 30 days
#12213 opened Jul 1, 2026 by ammaraziz Contributor Loading…
1
1
Update dependency nextflow-io/nextflow to v25.10.6 size/xs
#12210 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
Update dotnet monorepo size/xs
#12209 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
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